This class represents a heatmap. Contains methods for calling r-script, building texture and interaction methods etc. More...

Inheritance diagram for CellexalVR.AnalysisObjects.Heatmap:

Public Member Functions
void	Init ()

void	ResetHeatmapHighlight ()
	Removes the highlight box and the highlight text. More...

void	HighLightGene (string geneName)
	Highlights a gene in the genelist if it is there. For example when colouring from keyboard it draws attention to the gene in the list. More...

void	CreateNewHeatmapFromSelection (int selectedGroupLeft, int selectedGroupRight, int selectedGeneTop, int selectedGeneBottom, float selectedBoxWidth, float selectedBoxHeight)
	Creates a new heatmap based on what was selected on this heatmap. More...

void	UpdateAttributeWidhts ()
	Helper function to update the attribute bar widths. Used when creating a new hm from selection on old or moving groups around. More...

void	AddAttributeWidth (Dictionary< string, int > attributes, float cellWidth, Cell cell)
	Helper function to add attribute width and colour. More...

void	ReorderByAttribute ()
	Reorders the heatmap so that each selection group is reordered based on the attributes. Cells will be reordered so cells with the same attribute within the same group is next to each other. More...

void	SaveImage ()
	Saves the image used to create this heatmap to another directory. The saved image will have the a name based on when the image is saved. More...

void	DumpGenesToTextFile (string[] genes, string name)
	Dumps the genes into a text file. More...

void	UpdateImage (string filepath)
	Updates this heatmap's image. More...

void	ColorCells ()
	Recolours all graphs with the colors that the cells had when this heatmap was created. Graph points that are not part of this heatmap are not recoloured and will keep their colour. More...

void	SetVars (Dictionary< Cell, int > colors)
	Sets some variables. Should be called after a heatmap is instantiated. More...

Public Attributes
ReferenceManager	referenceManager

Texture	texture

TextMeshPro	infoText

TextMeshPro	statusText

TextMeshPro	barInfoText

SaveHeatmapButton	saveImageButton

GOanalysisButton	goAnalysisButton

GameObject	highlightQuad

GameObject	highlightGeneQuad

GameObject	confirmQuad

GameObject	movingQuadX

GameObject	movingQuadY

int	selectionNr

TextMeshPro	enlargedGeneText

TextMeshPro	highlightGeneText

TextMeshPro	highlightInfoText

bool	removable

string	directory

Bitmap	bitmap

List< Graph.GraphPoint >	selection

List< Tuple< int, float, int > >	groupWidths
	Item1: group number, Item2: group width in coordinates, Item3: number of cells in the group More...

List< Tuple< int, float, int > >	attributeWidths

List< Tuple< Cell, int > >	cellAttributes

Dictionary< int, UnityEngine.Color >	groupingColors

Dictionary< int, UnityEngine.Color >	attributeColors

Cell[]	cells

bool	createAnim = false

bool	orderedByAttribute = false

bool	buildingTexture = false

string[]	genes

int	bitmapWidth = 4096

int	bitmapHeight = 4096

int	heatmapX = 250

int	heatmapY = 250

int	heatmapWidth = 3596

int	heatmapHeight = 3596

int	geneListX = 3846

int	geneListWidth = 250

int	attributeBarY = 10

int	groupBarY = 120

int	groupBarHeight = 100

int	attributeBarHeight = 100

int	noAttribute = -2

int	lastAttribute = -1

int	attributeWidth = 0

Detailed Description

This class represents a heatmap. Contains methods for calling r-script, building texture and interaction methods etc.

Member Function Documentation

◆ AddAttributeWidth()

void CellexalVR.AnalysisObjects.Heatmap.AddAttributeWidth	(	Dictionary< string, int >	attributes,
		float	cellWidth,
		Cell	cell
	)

Helper function to add attribute width and colour.

◆ ColorCells()

void CellexalVR.AnalysisObjects.Heatmap.ColorCells ( )

Recolours all graphs with the colors that the cells had when this heatmap was created. Graph points that are not part of this heatmap are not recoloured and will keep their colour.

◆ CreateNewHeatmapFromSelection()

void CellexalVR.AnalysisObjects.Heatmap.CreateNewHeatmapFromSelection	(	int	selectedGroupLeft,
		int	selectedGroupRight,
		int	selectedGeneTop,
		int	selectedGeneBottom,
		float	selectedBoxWidth,
		float	selectedBoxHeight
	)

Creates a new heatmap based on what was selected on this heatmap.

◆ DumpGenesToTextFile()

void CellexalVR.AnalysisObjects.Heatmap.DumpGenesToTextFile	(	string[]	genes,
		string	name
	)

Dumps the genes into a text file.

◆ HighLightGene()

void CellexalVR.AnalysisObjects.Heatmap.HighLightGene ( string geneName )

Highlights a gene in the genelist if it is there. For example when colouring from keyboard it draws attention to the gene in the list.

Parameters

geneName The name of the gene.

◆ ReorderByAttribute()

void CellexalVR.AnalysisObjects.Heatmap.ReorderByAttribute ( )

Reorders the heatmap so that each selection group is reordered based on the attributes. Cells will be reordered so cells with the same attribute within the same group is next to each other.

◆ ResetHeatmapHighlight()

void CellexalVR.AnalysisObjects.Heatmap.ResetHeatmapHighlight ( )

Removes the highlight box and the highlight text.

◆ SaveImage()

void CellexalVR.AnalysisObjects.Heatmap.SaveImage ( )

Saves the image used to create this heatmap to another directory. The saved image will have the a name based on when the image is saved.

◆ SetVars()

void CellexalVR.AnalysisObjects.Heatmap.SetVars ( Dictionary< Cell, int > colors )

Sets some variables. Should be called after a heatmap is instantiated.

◆ UpdateAttributeWidhts()

void CellexalVR.AnalysisObjects.Heatmap.UpdateAttributeWidhts ( )

Helper function to update the attribute bar widths. Used when creating a new hm from selection on old or moving groups around.

◆ UpdateImage()

void CellexalVR.AnalysisObjects.Heatmap.UpdateImage ( string filepath )

Updates this heatmap's image.

Member Data Documentation

◆ groupWidths

List<Tuple<int, float, int> > CellexalVR.AnalysisObjects.Heatmap.groupWidths

Item1: group number, Item2: group width in coordinates, Item3: number of cells in the group

The documentation for this class was generated from the following file:

Assets/Scripts/AnalysisObjects/Heatmap.cs

Public Member Functions

Public Attributes