CellexalVR.AnalysisLogic.Cell Class Reference

Represents one cell. A cell may be present in multiple graphs. More...

Public Member Functions
	Cell (string label, GraphManager graphManager)
	Creates a new cell. More...
void	AddGraphPoint (Graph.GraphPoint g)
	Tell this cell that it is now represented by a graphpoint. A cell may be represented by many graphpoints (typically one in each graph). More...
void	ColorByCluster (int cluster, bool color)
void	SaveExpression (string saveGeneName, string removeGeneName)
	Saves the current gene expression of this cell is colored by More...
void	ColorByIndex (string facsName)
	Color all graphpoints that represents this cell by an index. I don't know enough biology to know what this actually is. More...
void	ColorByGeneExpression (int i)
	Colors this cell by a gene expression color. More...
void	AddNumericalAttribute (string attributeType, float value)
	Other numerical attribute that is not facs value or gene expression. More...
void	SetGroup (int group, bool changeColor)
	Sets the group and color of all graphpoints that are representing this cell. More...
void	InitSaveSingleFlashingGenesExpression (string category, int length)
	Initializes the cell for saving genee expressions for flashing. Should be called before SaveSingleFlashingGenesExpression(string, int, int) More...
void	SaveSingleFlashingGenesExpression (string category, int index, int expression)
	Saves a gene expression that can be flashed later. More...
void	SaveFlashingExpression (string category, int[] expression)
	Saves gene expressions so they can be flashed quickly later. More...
void	ClearFlashingExpressions ()
	Clears the saved flashing expressions. More...

Public Attributes
List< Graph.GraphPoint >	GraphPoints

Properties
Dictionary< string, float >	Facs [get]
Dictionary< string, string >	FacsValue [get]
Dictionary< string, float >	NumericalAttributes [get]
int	ExpressionLevel [get, set]
float	ExpressionValue [get, set]
string	Label [get, set]

Detailed Description

Represents one cell. A cell may be present in multiple graphs.

Constructor & Destructor Documentation

Cell()

CellexalVR.AnalysisLogic.Cell.Cell	(	string	label,
		GraphManager	graphManager
	)

Creates a new cell.

Parameters

label	A string that differentiates this cell from other cells.
graphManager	The graphmanager that this cell has graphpoints in.

Member Function Documentation

AddGraphPoint()

void CellexalVR.AnalysisLogic.Cell.AddGraphPoint

(

Graph.GraphPoint

g

)

Tell this cell that it is now represented by a graphpoint. A cell may be represented by many graphpoints (typically one in each graph).

Parameters

g	The graphpoint representing this cell.

AddNumericalAttribute()

void CellexalVR.AnalysisLogic.Cell.AddNumericalAttribute	(	string	attributeType,
		float	value
	)

Other numerical attribute that is not facs value or gene expression.

ClearFlashingExpressions()

void CellexalVR.AnalysisLogic.Cell.ClearFlashingExpressions

(

)

Clears the saved flashing expressions.

ColorByGeneExpression()

void CellexalVR.AnalysisLogic.Cell.ColorByGeneExpression

(

int

i

)

Colors this cell by a gene expression color.

Parameters

i	A number between 0 and CellexalVR.General.CellexalConfig.Config.GraphNumberOfExpressionColors

ColorByIndex()

void CellexalVR.AnalysisLogic.Cell.ColorByIndex

(

string

facsName

)

Color all graphpoints that represents this cell by an index. I don't know enough biology to know what this actually is.

Parameters

facsName

The index.

InitSaveSingleFlashingGenesExpression()

void CellexalVR.AnalysisLogic.Cell.InitSaveSingleFlashingGenesExpression	(	string	category,
		int	length
	)

Initializes the cell for saving genee expressions for flashing. Should be called before SaveSingleFlashingGenesExpression(string, int, int)

Parameters

category	The name of a category that should be initialized
length	The number of genes in that category

SaveExpression()

void CellexalVR.AnalysisLogic.Cell.SaveExpression	(	string	saveGeneName,
		string	removeGeneName
	)

Saves the current gene expression of this cell is colored by

Parameters

saveGeneName	The genename to save
removeGeneName	The name of a gene to remove or an empty string to not remove anything. Gene expressions can use up quite some memory so only 10 are saved at a time.

SaveFlashingExpression()

void CellexalVR.AnalysisLogic.Cell.SaveFlashingExpression	(	string	category,
		int[]	expression
	)

Saves gene expressions so they can be flashed quickly later.

Parameters

category	The category the gene expressions are in
expression	An array containing indices corresponding to GraphManager.GeneExpressionMaterials.

SaveSingleFlashingGenesExpression()

void CellexalVR.AnalysisLogic.Cell.SaveSingleFlashingGenesExpression	(	string	category,
		int	index,
		int	expression
	)

Saves a gene expression that can be flashed later.

Parameters

category	The name of the category that this gene is in
index	Which index it should be put on
expression	A value between 0 and CellexalConfig.Config.GraphNumberOfExpressionColors

SetGroup()

void CellexalVR.AnalysisLogic.Cell.SetGroup	(	int	group,
		bool	changeColor
	)

Sets the group and color of all graphpoints that are representing this cell.

Parameters

group

The new group.

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The documentation for this class was generated from the following file:

• cellexalvr_cloudxr/Assets/Scripts/AnalysisLogic/Cell.cs