CellexalVR.AnalysisObjects.GraphManager Class Reference

Represents a manager that holds all graphs. More...

Inheritance diagram for CellexalVR.AnalysisObjects.GraphManager:

Public Types
enum	GeneExpressionColoringMethods { EqualExpressionRanges, EqualCellNumbers }
	The different methods for coloring graphs by gene expression. The different options are: Linear: Each color represent a range of expression values. All ranges are the same size. Ranked: Each color contains the same number of cells. More...

Public Member Functions
Graph.GraphPoint	FindGraphPoint (string graphName, string label)
	Finds a graphpoint. More...
void	CheckNullNodes ()
void	RecolorGraphPoint (string label, int i)
void	ColorGraphsByFeature (string featureName)
void	ColorAllGraphsByGeneExpression (string geneName, ArrayList expressions)
	Color all graphs with the expression of some gene. More...
void	ColorAllGraphsBySelection (Selection selection)
	Colors all graphs by a selection. More...
void	DeleteGraphsAndNetworks ()
	Deletes all graphs and networks in the scene. More...
void	AddNetwork (NetworkHandler handler)
void	RemoveNetwork (NetworkHandler handler)
void	ToggleGraphPointTransparency (bool toggle)
	Toggles the transparency of all graph points on/off. More...
void	ClearExpressionColours ()
	Clears expression colours from graph but keeps current selection colours. More...
void	ResetGraphsColor ()
	Resets all graphpoints' in all graphs colors to white. More...
void	ResetGraphsPosition ()
	Resets the position, scale and color of all Graphs. More...
void	DeleteGraph (string name, string tag)
	Delete graph using the delete tool. More...
Graph	FindGraph (string graphName, bool caseSensitive=false)
	Finds a graph. More...
SpatialGraph	FindSpatialGraph (string graphName)
void	ClearLinesBetweenGraphs ()
	Removes all lines between graphpoints. More...
void	ToggleInfoPanels ()
	Set all graphs' info panels to visible or not visible. More...
void	ToggleAxes ()
	Set all graphs' axes to visible or not visible. More...

Public Attributes
ReferenceManager	referenceManager
AudioSource	goodSound
List< string >	directories
SelectionManager	selectionManager
List< Graph >	Graphs
List< Graph >	originalGraphs
List< Graph >	facsGraphs
List< Graph >	attributeSubGraphs
List< SpatialGraph >	spatialGraphs
List< string >	velocityFiles
GeneExpressionColoringMethods	GeneExpressionColoringMethod = GeneExpressionColoringMethods.EqualExpressionRanges

Detailed Description

Represents a manager that holds all graphs.

Member Enumeration Documentation

GeneExpressionColoringMethods

enum CellexalVR.AnalysisObjects.GraphManager.GeneExpressionColoringMethods

strong

The different methods for coloring graphs by gene expression. The different options are:

• Linear: Each color represent a range of expression values. All ranges are the same size.
• Ranked: Each color contains the same number of cells.

Member Function Documentation

ClearExpressionColours()

void CellexalVR.AnalysisObjects.GraphManager.ClearExpressionColours

(

)

Clears expression colours from graph but keeps current selection colours.

ClearLinesBetweenGraphs()

void CellexalVR.AnalysisObjects.GraphManager.ClearLinesBetweenGraphs

(

)

Removes all lines between graphpoints.

ColorAllGraphsByGeneExpression()

void CellexalVR.AnalysisObjects.GraphManager.ColorAllGraphsByGeneExpression	(	string	geneName,
		ArrayList	expressions
	)

Color all graphs with the expression of some gene.

Parameters

expressions

An arraylist with SQLiter.CellExpressionPair.

ColorAllGraphsBySelection()

void CellexalVR.AnalysisObjects.GraphManager.ColorAllGraphsBySelection

(

Selection

selection

)

Colors all graphs by a selection.

Parameters

selection

The selection to color by.

DeleteGraph()

void CellexalVR.AnalysisObjects.GraphManager.DeleteGraph	(	string	name,
		string	tag
	)

Delete graph using the delete tool.

Parameters

name	Name of the gameobject
tag	Tag of the graph. Behaves differently depending on if it is subgraph or facsgraph. Original graphs cannot be removed.

DeleteGraphsAndNetworks()

void CellexalVR.AnalysisObjects.GraphManager.DeleteGraphsAndNetworks

(

)

Deletes all graphs and networks in the scene.

FindGraph()

Graph CellexalVR.AnalysisObjects.GraphManager.FindGraph	(	string	graphName,
		bool	caseSensitive = false
	)

Finds a graph.

Parameters

graphName

The graph's name, or an empty string for any graph.

Returns

A reference to the graph, or null if no graph was found

FindGraphPoint()

Graph.GraphPoint CellexalVR.AnalysisObjects.GraphManager.FindGraphPoint	(	string	graphName,
		string	label
	)

Finds a graphpoint.

Parameters

graphName	The name of the graph the graphpoint is in.
label	The graphpoint's label.

Returns

A reference to the graphpoint, or null if it was not found.

ResetGraphsColor()

void CellexalVR.AnalysisObjects.GraphManager.ResetGraphsColor

(

)

Resets all graphpoints' in all graphs colors to white.

ResetGraphsPosition()

void CellexalVR.AnalysisObjects.GraphManager.ResetGraphsPosition

(

)

Resets the position, scale and color of all Graphs.

ToggleAxes()

void CellexalVR.AnalysisObjects.GraphManager.ToggleAxes

(

)

Set all graphs' axes to visible or not visible.

Parameters

visible

TRue for visible, false for invisible

ToggleGraphPointTransparency()

void CellexalVR.AnalysisObjects.GraphManager.ToggleGraphPointTransparency

(

bool

toggle

)

Toggles the transparency of all graph points on/off.

Parameters

toggle

ToggleInfoPanels()

void CellexalVR.AnalysisObjects.GraphManager.ToggleInfoPanels

(

)

Set all graphs' info panels to visible or not visible.

Parameters

visible

TRue for visible, false for invisible

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The documentation for this class was generated from the following file:

• cellexalvr_cloudxr/Assets/Scripts/AnalysisObjects/GraphManager.cs