Represents a gene expression histogram that is showed beside a graph. More...

Inheritance diagram for CellexalVR.AnalysisObjects.GeneExpressionHistogram:

Classes
class	HistogramData
	Holds all data needed to recreate a histogram. Can be used in CreateHistogram(HistogramData). More...

Public Types
enum	YAxisMode { Linear, Logarithmic }

Public Member Functions
void	ClearLegend ()
	Clears the legend of all current data. More...

void	UpdateAlphaThreshold (float val)

void	CreateHistogram (string geneName, int[] bins, string xAxisMaxLabel, YAxisMode barHeightMode, int skip=0)
	Creates a new histogram with the specifed barheights. More...

void	RecreateHistogram ()
	Recreates the current histogram. Should be used after DesiredYAxisMode or TallestBarsToSkip have been changed. More...

void	RecreateAllHistograms ()
	Recreates all histograms, Should be used after the number of expressions colors change. More...

void	SwitchToTab (int index)
	Switches to another previously generated histogram. More...

void	DeactivateHighlightArea ()
	Deactivates the highlight area and its accompanying text. More...

void	DeactivateSelectedArea ()
	Deactivates the selected highlight area and its accompanying text. More...

void	MoveHighlightArea (int minX, int maxX)
	Moves and resizes the highlight area to span between two bars. More...

void	MoveSelectedArea (int minX, int maxX)
	Moves and resizes the selected highlight area to span between two bars. More...

override void	OnRaycastHit (RaycastHit hitInfo, CellexalRaycast raycaster)
	Called by CellexalRaycast.Update every frame that a raycast hit this target. More...

Vector3	WorldToRelativeHistogramPos (Vector3 worldPos)
	Projects and converts a world coordinate to local coordinates More...

Public Member Functions inherited from CellexalVR.AnalysisObjects.EnvironmentTab
void	SetTabActive (bool active)
	Enables or disables the content gameobject of this tab. More...

Public Member Functions inherited from CellexalVR.Interaction.CellexalRaycastable
virtual void	OnRaycastEnter ()
	Called on the first frame that this CellexalRaycastable is hit by a CellexalRaycast. More...

virtual void	OnRaycastExit ()
	Called on the first frame that this CellexalRaycastable is not hit by a CellexalRaycast anymore. More...

Public Attributes
ReferenceManager	referenceManager

GameObject	histogramParent

TextMeshPro	geneNameLabel

TextMeshPro	yAxisMaxLabel

TextMeshPro	xAxisMaxLabel

TextMeshPro	yAxisLabel

GameObject	barPrefab

GameObject	highlightArea

TextMeshPro	highlightAreaInfoText

GameObject	selectedArea

TextMeshPro	selectedAreaInfoText

GameObject	cutOffBarTopShape

TextMeshPro	filterTextLabel

List< HistogramTabButton >	tabButtons = new List<HistogramTabButton>(10)

Public Attributes inherited from CellexalVR.AnalysisObjects.EnvironmentTab
EnvironmentTabButton	tabButton

GameObject	contentParent

EnvironmentMenuWithTabs	parentMenu

Public Attributes inherited from CellexalVR.Interaction.CellexalRaycastable
UnityEvent	OnActivate

UnityEvent	RaycastEnter

UnityEvent	RaycastExit

bool	canBePushedAndPulled = true

bool	active = true

Properties
Vector3	HistogramMinPos `[get]`
	Local position of the lower left corner of the histogram in the LegendManager local pos. More...

Vector3	HistogramMaxPos `[get]`
	Local position of the upper right corner of the histogram. More...

int	NumberOfBars `[get]`

int	TallestBarsToSkip `[get, set]`
	The number of tallest bars to skip when scaling the Y axis. Call RecreateHistogram after changing this. More...

YAxisMode	DesiredYAxisMode `[get, set]`
	The desired Y axis scaling mode. Call RecreateHistogram after changing this. More...

Detailed Description

Represents a gene expression histogram that is showed beside a graph.

Member Function Documentation

◆ ClearLegend()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.ClearLegend ( )

Clears the legend of all current data.

◆ CreateHistogram()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.CreateHistogram	(	string	geneName,
		int[]	bins,
		string	xAxisMaxLabel,
		YAxisMode	barHeightMode,
		int	skip = `0`
	)

Creates a new histogram with the specifed barheights.

Parameters

geneName	The name of the gene
bins	An array of ints that represents the heights of the bars.
xAxisMaxLabel	The label at the max value of the x-axis
barHeightMode	The Y axis mode to use.
skip	The number of tallest bars to cut, so the n:th tallest bar uses up all of the y axis.

◆ DeactivateHighlightArea()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.DeactivateHighlightArea ( )

Deactivates the highlight area and its accompanying text.

◆ DeactivateSelectedArea()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.DeactivateSelectedArea ( )

Deactivates the selected highlight area and its accompanying text.

◆ MoveHighlightArea()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.MoveHighlightArea	(	int	minX,
		int	maxX
	)

Moves and resizes the highlight area to span between two bars.

Parameters

minX	The index of the left bar
maxX	The index of the right bar

◆ MoveSelectedArea()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.MoveSelectedArea	(	int	minX,
		int	maxX
	)

Moves and resizes the selected highlight area to span between two bars.

Parameters

minX	The index of the left bar
maxX	The index of the right bar

◆ OnRaycastHit()

override void CellexalVR.AnalysisObjects.GeneExpressionHistogram.OnRaycastHit	(	RaycastHit	hitInfo,
		CellexalRaycast	raycaster
	)

virtual

Called by CellexalRaycast.Update every frame that a raycast hit this target.

Parameters

hitInfo	The RaycastHit from the Physics.Raycast call.
raycaster	The CellexalRaycast that made the Physics.Raycast call.

Reimplemented from CellexalVR.Interaction.CellexalRaycastable.

◆ RecreateAllHistograms()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.RecreateAllHistograms ( )

Recreates all histograms, Should be used after the number of expressions colors change.

◆ RecreateHistogram()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.RecreateHistogram ( )

Recreates the current histogram. Should be used after DesiredYAxisMode or TallestBarsToSkip have been changed.

◆ SwitchToTab()

void CellexalVR.AnalysisObjects.GeneExpressionHistogram.SwitchToTab ( int index )

Switches to another previously generated histogram.

Parameters

index The tab to switch to.

◆ WorldToRelativeHistogramPos()

Vector3 CellexalVR.AnalysisObjects.GeneExpressionHistogram.WorldToRelativeHistogramPos ( Vector3 worldPos )

Projects and converts a world coordinate to local coordinates

Parameters

worldPos

Returns

Property Documentation

◆ DesiredYAxisMode

YAxisMode CellexalVR.AnalysisObjects.GeneExpressionHistogram.DesiredYAxisMode

getset

The desired Y axis scaling mode. Call RecreateHistogram after changing this.

◆ HistogramMaxPos

Vector3 CellexalVR.AnalysisObjects.GeneExpressionHistogram.HistogramMaxPos

get

Local position of the upper right corner of the histogram.

◆ HistogramMinPos

Vector3 CellexalVR.AnalysisObjects.GeneExpressionHistogram.HistogramMinPos

get

Local position of the lower left corner of the histogram in the LegendManager local pos.

◆ TallestBarsToSkip

int CellexalVR.AnalysisObjects.GeneExpressionHistogram.TallestBarsToSkip

getset

The number of tallest bars to skip when scaling the Y axis. Call RecreateHistogram after changing this.

The documentation for this class was generated from the following file:

cellexalvr_cloudxr/Assets/Scripts/AnalysisObjects/GeneExpressionHistogram.cs

Classes

Public Types

Public Member Functions

Public Attributes

Properties

Detailed Description

Member Function Documentation

◆ ClearLegend()

◆ CreateHistogram()

◆ DeactivateHighlightArea()

◆ DeactivateSelectedArea()

◆ MoveHighlightArea()

◆ MoveSelectedArea()

◆ OnRaycastHit()

◆ RecreateAllHistograms()

◆ RecreateHistogram()

◆ SwitchToTab()

◆ WorldToRelativeHistogramPos()

Property Documentation

◆ DesiredYAxisMode

◆ HistogramMaxPos

◆ HistogramMinPos

◆ TallestBarsToSkip