Class that represents a hisology image for spatial data. Image coordinates are linked to graph points. More...

Inheritance diagram for CellexalVR.Spatial.HistoImage:

Public Member Functions
void	Initialize ()
	Initialize by setting texture coordinates and linking to graph points. More...

void	UpdateColorTexture ()
	Similar to how a graph slice updates to its parent points cloud a histology image is seen as a subset of all the data and images loaded. This method makes sure the color of the points are in synch with the color texture map of the entire dataset. More...

void	CropToTissue ()
	Crops outside parts of texture that does not have tissue on it. More...

void	ScaleCoordinates ()
	Helper function to scale all point coordinates. More...

Vector3	ScaleCoordinate (Vector3 coord)
	Helper function to scale a coordinate. More...

void	AddGraphPoint (int x, int y)
	Add graph point and update the min max coordinates later used for scaling the graph. More...

Public Attributes
Texture2D	texture

string	file

LineRenderer[]	lines = new LineRenderer[4]

Vector3	maxValues

Vector3	minValues

Vector3	scaledMaxValues

Vector3	scaledMinValues

Vector3	texMaxValues

Vector3	texMinValues

Dictionary< string, Vector2Int >	textureCoords = new Dictionary<string, Vector2Int>()

float	longestAxis

Vector3	scaledOffset

int	sliceNr

GameObject	image

VisualEffect	visualEffect

Detailed Description

Class that represents a hisology image for spatial data. Image coordinates are linked to graph points.

Member Function Documentation

◆ AddGraphPoint()

void CellexalVR.Spatial.HistoImage.AddGraphPoint	(	int	x,
		int	y
	)

Add graph point and update the min max coordinates later used for scaling the graph.

Parameters

x
y

◆ CropToTissue()

void CellexalVR.Spatial.HistoImage.CropToTissue ( )

Crops outside parts of texture that does not have tissue on it.

◆ Initialize()

void CellexalVR.Spatial.HistoImage.Initialize ( )

Initialize by setting texture coordinates and linking to graph points.

◆ ScaleCoordinate()

Vector3 CellexalVR.Spatial.HistoImage.ScaleCoordinate ( Vector3 coord )

Helper function to scale a coordinate.

Parameters

coord

Returns

◆ ScaleCoordinates()

void CellexalVR.Spatial.HistoImage.ScaleCoordinates ( )

Helper function to scale all point coordinates.

◆ UpdateColorTexture()

void CellexalVR.Spatial.HistoImage.UpdateColorTexture ( )

Similar to how a graph slice updates to its parent points cloud a histology image is seen as a subset of all the data and images loaded. This method makes sure the color of the points are in synch with the color texture map of the entire dataset.

The documentation for this class was generated from the following file:

cellexalvr_cloudxr/Assets/Scripts/Spatial/HistoImage.cs

Public Member Functions

Public Attributes