CellexalVR.AnalysisObjects.GraphGenerator Class Reference

A graph that contain one or more CombinedCluster that in turn contain one or more CombinedGraphPoint. More...

Inheritance diagram for CellexalVR.AnalysisObjects.GraphGenerator:

Classes
struct	CombineMeshesJob
	Job that combines the meshes of one cluster. More...

Public Types
enum	GraphType {   MDS, FACS, ATTRIBUTE, BETWEEN,   SPATIAL }

Public Member Functions
Graph	CreateGraph (GraphType type)
	Creates a new graph of the given type. More...
void	CreateShaderColors ()
	Creates the texture that the CombinedGraph shader uses to fetch colors for the graphpoints. More...
Graph.GraphPoint	AddGraphPoint (Cell cell, float x, float y, float z, Graph graph=null)
	Adds a graphpoint to this graph. The coordinates should be scaled later with ScaleAllCoordinates. More...
void	AddAxes (Graph graph, string[] axisNames)
	Adds arrows representing the axes of the graph. More...
void	AddLODGroup (Graph combGraph, int i)
	Helper function to add level of detail group when building graphs. More...
IEnumerator	SliceClusteringLOD (int lodGroups, Dictionary< string, Graph.GraphPoint > points=null, GraphSlice slice=null)
	Coroutine. Divides the graph into clusters and creates one mesh for each cluster per LOD group. More...
List< HashSet< Graph.GraphPoint > >	SliceClustering (Dictionary< string, Graph.GraphPoint > points=null, GraphSlice slice=null)
	Divides the graph into clusters. The graph starts out as one large cluster and is recursively divided into smaller and smaller clusters until all clusters can be rendered in Unity using a single mesh. More...
void	UpdateCoords ()
void	CreateSubGraphs ()
void	CreateMeshFromCommandLine ()
void	CreateMesh ()
void	CreateSubGraphs (List< string > attributes)
	Creates a subgraph based on some attrbiutes. More...
void	UpdateMeshToUse ()
IEnumerator	RebuildGraphs ()
	Rebuilding graphs while when mesh has changed such as to another size or quality. The color of the points are kept More...
void	UpdateLODGroups (Graph graph=null, int nrOfLODGroups=1, GraphSlice slice=null)
	Updates the LODGroup components list of renderers. More...

Static Public Member Functions
static string	V2S (Vector2 v)
static string	V2S (Vector3 v)
static string	V2S (Vector4 v)

Public Attributes
ReferenceManager	referenceManager
GameObject	graphpointsPrefab
GameObject	graphPrefab
GameObject	spatialSlicePrefab
GameObject	AxesPrefabColoured
GameObject	AxesPrefabUncoloured
Material	graphPointMaterialPrefab
GameObject	skeletonPrefab
Mesh	graphpointStandardQStandardSzMesh
Mesh	graphpointStandardQSmallSzMesh
Mesh	graphpointStandardQLargeSzMesh
Mesh	graphpointLowQStandardSzMesh
Mesh	graphpointLowQSmallSzMesh
Mesh	graphpointLowQLargeSzMesh
Mesh	meshToUse
bool	isCreating
int	nrOfLODGroups = 3
Color[]	geneExpressionColors
Texture2D	graphPointColors
int	graphCount
Graph	newGraph

Properties
string	DirectoryName [get, set]

Detailed Description

A graph that contain one or more CombinedCluster that in turn contain one or more CombinedGraphPoint.

Member Function Documentation

AddAxes()

void CellexalVR.AnalysisObjects.GraphGenerator.AddAxes	(	Graph	graph,
		string[]	axisNames
	)

Adds arrows representing the axes of the graph.

Parameters

graph	The graph to add axes to.
axisNames	The labels on the axes.

AddGraphPoint()

Graph.GraphPoint CellexalVR.AnalysisObjects.GraphGenerator.AddGraphPoint	(	Cell	cell,
		float	x,
		float	y,
		float	z,
		Graph	graph = null
	)

Adds a graphpoint to this graph. The coordinates should be scaled later with ScaleAllCoordinates.

Parameters

label	The graphpoint's (cell's) name.
x	The x-coordinate.
y	The y-coordinate.
z	The z-coordinate.

AddLODGroup()

void CellexalVR.AnalysisObjects.GraphGenerator.AddLODGroup	(	Graph	combGraph,
		int	i
	)

Helper function to add level of detail group when building graphs.

CreateGraph()

Graph CellexalVR.AnalysisObjects.GraphGenerator.CreateGraph

(

GraphType

type

)

Creates a new graph of the given type.

Parameters

type	The type of graph to create.

Returns

The new graph.

CreateShaderColors()

void CellexalVR.AnalysisObjects.GraphGenerator.CreateShaderColors

(

)

Creates the texture that the CombinedGraph shader uses to fetch colors for the graphpoints.

CreateSubGraphs()

void CellexalVR.AnalysisObjects.GraphGenerator.CreateSubGraphs

(

List< string >

attributes

)

Creates a subgraph based on some attrbiutes.

Parameters

attributes

The attributes to include in the subgraph.

RebuildGraphs()

IEnumerator CellexalVR.AnalysisObjects.GraphGenerator.RebuildGraphs

(

)

Rebuilding graphs while when mesh has changed such as to another size or quality. The color of the points are kept

Returns

SliceClustering()

List<HashSet<Graph.GraphPoint> > CellexalVR.AnalysisObjects.GraphGenerator.SliceClustering	(	Dictionary< string, Graph.GraphPoint >	points = null,
		GraphSlice	slice = null
	)

Divides the graph into clusters. The graph starts out as one large cluster and is recursively divided into smaller and smaller clusters until all clusters can be rendered in Unity using a single mesh.

SliceClusteringLOD()

IEnumerator CellexalVR.AnalysisObjects.GraphGenerator.SliceClusteringLOD	(	int	lodGroups,
		Dictionary< string, Graph.GraphPoint >	points = null,
		GraphSlice	slice = null
	)

Coroutine. Divides the graph into clusters and creates one mesh for each cluster per LOD group.

Parameters

lodGroups	The number of LOD groups to create.
points	Optional. The points to cluster, or null for all graph points in the currently creating graph.

UpdateLODGroups()

void CellexalVR.AnalysisObjects.GraphGenerator.UpdateLODGroups	(	Graph	graph = null,
		int	nrOfLODGroups = 1,
		GraphSlice	slice = null
	)

Updates the LODGroup components list of renderers.

Parameters

graph	The graph to update LODGroup for.
nrOfLODGroups	The numnber of LOD groups.
slice	Use if updating a GraphSlice instead of a Graph.

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The documentation for this class was generated from the following file:

• cellexalvr_cloudxr/Assets/Scripts/AnalysisObjects/GraphGenerator.cs